Monthly
288 pp. per issue
6 x 9, illustrated
Founded: 1989
ISSN 0899-7667
E-ISSN 1530-888X
2010 Impact Factor: 2.290
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May 2004, Vol. 16, No. 5, Pages 971-998
Posted Online March 13, 2006.
(doi:10.1162/089976604773135069)
© 2004 Massachusetts Institute of Technology
Dynamic Analysis of Neural Encoding by Point Process Adaptive FilteringUri T. EdenNeuroscience Statistics Research Laboratory, Department of Anesthesia and Critical Care, Massachusetts General Hospital, Boston, MA 02114, and Division of Health Sciences and Technology, Harvard Medical School/Massachusetts Institute of Technology, Cambridge, MA 02139, U.S.A., tzvi@neurostat.mgh.harvard.edu Loren M. FrankNeuroscience Statistics Research Laboratory, Department of Anesthesia and Critical Care, Massachusetts General Hospital, Boston, MA 02114, U.S.A., loren@neurostat.mgh.harvard.edu Riccardo BarbieriNeuroscience Statistics Research Laboratory, Department of Anesthesia and Critical Care, Massachusetts General Hospital, Boston, MA 02114, U.S.A., barbieri@neurostat.mgh.harvard.edu Victor SoloSchool of Electrical Engineering and Telecommunications, University of New South Wales, Sydney, Australia, and Martinos Center for Biomedical Imaging, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02114, U.S.A., vsolo@nmr.mgh.harvard.edu Emery N. BrownNeuroscience Statistics Research Laboratory, Department of Anesthesia and Critical Care, Massachusetts General Hospital, Boston, MA 02114, and Division of Health Sciences and Technology, Harvard Medical School/Massachusetts Institute of Technology, Cambridge, MA 02139, U.S.A., brown@neurostat.mgh.harvard.edu
Neural receptive fields are dynamic in that with experience, neurons change their spiking responses to relevant stimuli. To understand how neural systems adapt the irrepresentations of biological information, analyses of receptive field plasticity from experimental measurements are crucial. Adaptive signal processing, the well-established engineering discipline for characterizing the temporal evolution of system parameters, suggests a framework for studying the plasticity of receptive fields. We use the Bayes' rule Chapman-Kolmogorov paradigm with a linear state equation and point process observation models to derive adaptive filters appropriate for estimation from neural spike trains. We derive point process filter analogues of the Kalman filter, recursive least squares, and steepest-descent algorithms and describe the properties of these new fil-ters. We illustrate our algorithms in two simulated data examples. The first is a study of slow and rapid evolution of spatial receptive fields in hippocampal neurons. The second is an adaptive decoding study in which a signal is decoded from ensemble neural spiking activity as the recep-tive fields of the neurons in the ensemble evolve. Our results provide a paradigm for adaptive estimation for point process observations and suggest a practical approach for constructing filtering algorithms to track neural receptive field dynamics on a millisecond timescale. Cited byRyota Kobayashi, Shigeru Shinomoto, Petr Lansky. (2011) Estimation of Time-Dependent Input from Neuronal Membrane Potential. Neural Computation 23:12, 3070-3093 Online publication date: 1-Dec-2011. Abstract | Full Text | PDF (822 KB) | PDF Plus (436 KB) Zheng Li, Joseph E. O'Doherty, Mikhail A. Lebedev, Miguel A. L. Nicolelis. (2011) Adaptive Decoding for Brain-Machine Interfaces Through Bayesian Parameter Updates. Neural Computation 23:12, 3162-3204 Online publication date: 1-Dec-2011. Abstract | Full Text | PDF (728 KB) | PDF Plus (541 KB) Vernon Lawhern, Nicholas G. Hatsopoulos, Wei Wu. (2011) Coupling time decoding and trajectory decoding using a target-included model in the motor cortex. NeurocomputingOnline publication date: 1-Dec-2011. CrossRef Sridevi V. Sarma, David P. Nguyen, Gabriela Czanner, Sylvia Wirth, Matthew A. Wilson, Wendy Suzuki, Emery N. Brown. (2011) Computing Confidence Intervals for Point Process Models. Neural Computation 23:11, 2731-2745 Online publication date: 1-Nov-2011. Abstract | Full Text | PDF (371 KB) | PDF Plus (237 KB) Michael J. Prerau, Uri T. Eden. (2011) A General Likelihood Framework for Characterizing the Time Course of Neural Activity. Neural Computation 23:10, 2537-2566 Online publication date: 1-Oct-2011. Abstract | Full Text | PDF (603 KB) | PDF Plus (364 KB) Andrew Zammit Mangion, Ke Yuan, Visakan Kadirkamanathan, Mahesan Niranjan, Guido Sanguinetti. (2011) Online Variational Inference for State-Space Models with Point-Process Observations. Neural Computation 23:8, 1967-1999 Online publication date: 1-Aug-2011. Abstract | Full Text | PDF (968 KB) | PDF Plus (556 KB) Felipe Gerhard, Robert Haslinger, Gordon Pipa. (2011) Applying the Multivariate Time-Rescaling Theorem to Neural Population Models. Neural Computation 23:6, 1452-1483 Online publication date: 1-Jun-2011. Abstract | Full Text | PDF (822 KB) | PDF Plus (490 KB) L Srinivasan, M da Silva. (2011) Breaking the Fixed-Arrival-Time Restriction in Reaching Movements of Neural Prosthetic Devices. IEEE Transactions on Biomedical Engineering 58:6, 1555-1564 Online publication date: 1-Jun-2011. CrossRef Sean Escola, Alfredo Fontanini, Don Katz, Liam Paninski. (2011) Hidden Markov Models for the Stimulus-Response Relationships of Multistate Neural Systems. Neural Computation 23:5, 1071-1132 Online publication date: 1-May-2011. Abstract | Full Text | PDF (1230 KB) | PDF Plus (777 KB) Yashar Ahmadian, Jonathan W. Pillow, Liam Paninski. (2011) Efficient Markov Chain Monte Carlo Methods for Decoding Neural Spike Trains. Neural Computation 23:1, 46-96 Online publication date: 1-Jan-2011. Abstract | Full Text | PDF (1049 KB) | PDF Plus (1073 KB) Cyrus Omar, Abdullah Akce, Miles Johnson, Timothy Bretl, Rui Ma, Edward Maclin, Martin McCormick, Todd Coleman. (2011) A Feedback Information-Theoretic Approach to the Design of Brain-Computer Interfaces. International Journal of Human-Computer Interaction 27:1, 5-23 Online publication date: 1-Jan-2011. CrossRef Zhe Chen, Patrick L. Purdon, Grace Harrell, Eric T. Pierce, John Walsh, Emery N. Brown, Riccardo Barbieri. (2010) Dynamic Assessment of Baroreflex Control of Heart Rate During Induction of Propofol Anesthesia Using a Point Process Method. Annals of Biomedical EngineeringOnline publication date: 13-Oct-2010. CrossRef Yiwen Wang, Jose C Principe. (2010) Instantaneous estimation of motor cortical neural encoding for online brain–machine interfaces. Journal of Neural Engineering 7:5, 056010 Online publication date: 1-Oct-2010. CrossRef Jean-Pascal Pfister, Peter Dayan, Máté Lengyel. (2010) Synapses with short-term plasticity are optimal estimators of presynaptic membrane potentials. Nature Neuroscience 13:10, 1271-1275 Online publication date: 1-Oct-2010. CrossRef Ke Yuan, Mahesan Niranjan. (2010) Estimating a State-Space Model from Point Process Observations: A Note on Convergence. Neural Computation 22:8, 1993-2001 Online publication date: 1-Aug-2010. Abstract | Full Text | PDF (214 KB) | PDF Plus (239 KB) Liam Paninski, Yashar Ahmadian, Daniel Gil Ferreira, Shinsuke Koyama, Kamiar Rahnama Rad, Michael Vidne, Joshua Vogelstein, Wei Wu. (2010) A new look at state-space models for neural data. Journal of Computational Neuroscience 29:1-2, 107-126 Online publication date: 1-Aug-2010. CrossRef Shinsuke Koyama, Steven M. Chase, Andrew S. Whitford, Meel Velliste, Andrew B. Schwartz, Robert E. Kass. (2010) Comparison of brain–computer interface decoding algorithms in open-loop and closed-loop control. Journal of Computational Neuroscience 29:1-2, 73-87 Online publication date: 1-Aug-2010. CrossRef Shinsuke Koyama, Liam Paninski. (2010) Efficient computation of the maximum a posteriori path and parameter estimation in integrate-and-fire and more general state-space models. Journal of Computational Neuroscience 29:1-2, 89-105 Online publication date: 1-Aug-2010. CrossRef Vernon Lawhern, Wei Wu, Nicholas Hatsopoulos, Liam Paninski. (2010) Population decoding of motor cortical activity using a generalized linear model with hidden states. Journal of Neuroscience Methods 189:2, 267-280 Online publication date: 15-Jun-2010. CrossRef Blažena Frcalová, Viktor Beneš, Daniel Klement. (2010) Spatio-temporal point process filtering methods with an application. Environmetrics 21:3-4, 240-252 Online publication date: 1-May-2010. CrossRef Yi Yu, Shao-min Zhang, Huai-jian Zhang, Xiao-chun Liu, Qiao-sheng Zhang, Xiao-xiang Zheng, Jian-hua Dai. (2010) Neural decoding based on probabilistic neural network. Journal of Zhejiang University SCIENCE B 11:4, 298-306 Online publication date: 1-Apr-2010. CrossRef Theodore W. Berger, Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis. (2010) The Neurobiological Basis of Cognition: Identification by Multi-Input, Multioutput Nonlinear Dynamic Modeling. Proceedings of the IEEE 98:3, 356-374 Online publication date: 1-Mar-2010. CrossRef Shinsuke Koyama. (2010) Approximate Methods for State-Space Models. Journal of the American Statistical Association 105:489, 170-180 Online publication date: 1-Mar-2010. CrossRef Shinsuke Koyama, Uri T. Eden, Emery N. Brown, Robert E. Kass. (2010) Bayesian decoding of neural spike trains. Annals of the Institute of Statistical Mathematics 62:1, 37-59 Online publication date: 1-Feb-2010. CrossRef Robert Haslinger, Kristina Lisa Klinkner, Cosma Rohilla Shalizi. (2010) The Computational Structure of Spike Trains. Neural Computation 22:1, 121-157 Online publication date: 1-Jan-2010. Abstract | Full Text | PDF (991 KB) | PDF Plus (1007 KB) Yifei Huang, Mark P. Brandon, Amy L. Griffin, Michael E. Hasselmo, Uri T. Eden. (2009) Decoding Movement Trajectories Through a T-Maze Using Point Process Filters Applied to Place Field Data from Rat Hippocampal Region CA1. Neural Computation 21:12, 3305-3334 Online publication date: 1-Dec-2009. Abstract | Full Text | PDF (627 KB) | PDF Plus (368 KB) John P. Cunningham, Vikash Gilja, Stephen I. Ryu, Krishna V. Shenoy. (2009) Methods for estimating neural firing rates, and their application to brain–machine interfaces. Neural Networks 22:9, 1235-1246 Online publication date: 1-Nov-2009. CrossRef Anne C. Smith, Sudhin A. Shah, Andrew E. Hudson, Keith P. Purpura, Jonathan D. Victor, Emery N. Brown, Nicholas D. Schiff. (2009) A Bayesian statistical analysis of behavioral facilitation associated with deep brain stimulation. Journal of Neuroscience Methods 183:2, 267-276 Online publication date: 15-Oct-2009. CrossRef Yiwen Wang, António R. C. Paiva, José C. Príncipe, Justin C. Sanchez. (2009) Sequential Monte Carlo Point-Process Estimation of Kinematics from Neural Spiking Activity for Brain-Machine Interfaces. Neural Computation 21:10, 2894-2930 Online publication date: 1-Oct-2009. Abstract | Full Text | PDF (976 KB) | PDF Plus (555 KB) Wei Wu, J.E. Kulkarni, N.G. Hatsopoulos, L. Paninski. (2009) Neural Decoding of Hand Motion Using a Linear State-Space Model With Hidden States. IEEE Transactions on Neural Systems and Rehabilitation Engineering 17:4, 370-378 Online publication date: 1-Aug-2009. CrossRef Yiwen Wang, Jose C. Principe, Justin C. Sanchez. (2009) Ascertaining neuron importance by information theoretical analysis in motor Brain–Machine Interfaces  . Neural Networks 22:5-6, 781-790 Online publication date: 1-Jul-2009. CrossRef Omer Bobrowski, Ron Meir, Yonina C. Eldar. (2009) Bayesian Filtering in Spiking Neural Networks: Noise, Adaptation, and Multisensory Integration. Neural Computation 21:5, 1277-1320 Online publication date: 1-May-2009. Abstract | Full Text | PDF (1080 KB) | PDF Plus (507 KB) I. Chairez, A. Poznyak, T. Poznyak. (2009) Stable weights dynamics for a class of differential neural network observer. IET Control Theory & Applications 3:10, 1437 Online publication date: 1-Jan-2009. CrossRef Vitaly Napadow, Rupali Dhond, Giulia Conti, Nikos Makris, Emery N. Brown, Riccardo Barbieri. (2008) Brain correlates of autonomic modulation: Combining heart rate variability with fMRI. NeuroImage 42:1, 169-177 Online publication date: 1-Aug-2008. CrossRef M. J. Prerau, A. C. Smith, U. T. Eden, M. Yanike, W. A. Suzuki, E. N. Brown. (2008) A mixed filter algorithm for cognitive state estimation from simultaneously recorded continuous and binary measures of performance. Biological Cybernetics 99:1, 1-14 Online publication date: 1-Jul-2008. CrossRef Wei Wu, Nicholas G. Hatsopoulos. (2008) Real-Time Decoding of Nonstationary Neural Activity in Motor Cortex. IEEE Transactions on Neural Systems and Rehabilitation Engineering 16:3, 213-222 Online publication date: 1-Jun-2008. CrossRef Timm Lochmann, Sophie Denève. (2008) Information transmission with spiking Bayesian neurons. New Journal of Physics 10:5, 055019 Online publication date: 1-May-2008. CrossRef Apostolos P. Georgopoulos, Elissaios Karageorgiou. (2008) Neurostatistics: Applications, challenges and expectations. Statistics in Medicine 27:3, 407-417 Online publication date: 10-Feb-2008. CrossRef Mounya Elhilali, Shihab A. Shamma. (2008) A cocktail party with a cortical twist: How cortical mechanisms contribute to sound segregation. The Journal of the Acoustical Society of America 124:6, 3751 Online publication date: 1-Jan-2008. CrossRef A. E. Brockwell, Robert E. Kass, A. B. Schwartz. (2007) Statistical Signal Processing and the Motor Cortex. Proceedings of the IEEE 95:5, 881-898 Online publication date: 1-May-2007. CrossRef Wilson Truccolo, John P. Donoghue. (2007) Nonparametric Modeling of Neural Point Processes via Stochastic Gradient Boosting Regression. Neural Computation 19:3, 672-705 Online publication date: 1-Mar-2007. Abstract | PDF (843 KB) | PDF Plus (884 KB) Ayla Ergun, Riccardo Barbieri, Uri T. Eden, Matthew A. Wilson, Emery N. Brown. (2007) Construction of Point Process Adaptive Filter Algorithms for Neural Systems Using Sequential Monte Carlo Methods. IEEE Transactions on Biomedical Engineering 54:3, 419-428 Online publication date: 1-Mar-2007. CrossRef Lakshminarayan Srinivasan, Emery N. Brown. (2007) A State-Space Framework for Movement Control to Dynamic Goals Through Brain-Driven Interfaces. IEEE Transactions on Biomedical Engineering 54:3, 526-535 Online publication date: 1-Mar-2007. CrossRef Justin C. Sanchez, José C. Principe. (2007) Brain–Machine Interface Engineering. Synthesis Lectures on Biomedical Engineering 2:1, 1-234 Online publication date: 1-Jan-2007. CrossRef Lakshminarayan Srinivasan, Uri T. Eden, Alan S. Willsky, Emery N. Brown. (2006) A State-Space Analysis for Reconstruction of Goal-Directed Movements Using Neural Signals. Neural Computation 18:10, 2465-2494 Online publication date: 1-Oct-2006. Abstract | PDF (1651 KB) | PDF Plus (1700 KB) Wei Wu, Yun Gao, Elie Bienenstock, John P. Donoghue, Michael J. Black. (2006) Bayesian Population Decoding of Motor Cortical Activity Using a Kalman Filter. Neural Computation 18:1, 80-118 Online publication date: 1-Jan-2006. Abstract | PDF (345 KB) | PDF Plus (402 KB) R. Barbieri, E.N. Brown. (2006) Analysis of Heartbeat Dynamics by Point Process Adaptive Filtering. IEEE Transactions on Biomedical Engineering 53:1, 4-12 Online publication date: 1-Jan-2006. CrossRef N.A. Lesica, G.B. Stanley. (2005) Improved Tracking of Time-Varying Encoding Properties of Visual Neurons by Extended Recursive Least-Squares. IEEE Transactions on Neural Systems and Rehabilitation Engineering 13:2, 194-200 Online publication date: 1-Jun-2005. CrossRef R. Barbieri, M.A. Wilson, L.M. Frank, E.N. Brown. (2005) An Analysis of Hippocampal Spatio-Temporal Representations Using a Bayesian Algorithm for Neural Spike Train Decoding. IEEE Transactions on Neural Systems and Rehabilitation Engineering 13:2, 131-136 Online publication date: 1-Jun-2005. CrossRef Gregory J Gage, Kip A Ludwig, Kevin J Otto, Edward L Ionides, Daryl R Kipke. (2005) Naïve coadaptive cortical control. Journal of Neural Engineering 2:2, 52-63 Online publication date: 1-Jun-2005. CrossRef
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