Monthly
288 pp. per issue
6 x 9, illustrated
Founded: 1989
ISSN 0899-7667
E-ISSN 1530-888X
2010 Impact Factor: 2.290
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December 2004, Vol. 16, No. 12, Pages 2533-2561
Posted Online March 13, 2006.
(doi:10.1162/0899766042321797)
© 2004 Massachusetts Institute of Technology
Maximum Likelihood Estimation of a Stochastic Integrate-and-Fire Neural Encoding ModelLiam PaninskiHoward Hughes Medical Institute, Center for Neural Science, New York University, New York, NY 10003, U.S.A., and Gatsby Computational Neuroscience Unit, University College London, London WC1N 3AR, U.K. liam@cns.nyu.edu Jonathan W. PillowHoward Hughes Medical Institute, Center for Neural Science, New York University, New York, NY 10003, U.S.A. pillow@cns.nyu.edu Eero P. SimoncelliHoward Hughes Medical Institute, Center for Neural Science, and Courant Institute for Mathematical Science, New York University, New York, NY 10003, U.S.A. eero@cns.nyu.edu
We examine a cascade encoding model for neural response in which a linear filtering stage is followed by a noisy, leaky, integrate-and-fire spike generation mechanism. This model provides a biophysically more realistic alternative to models based on Poisson (memoryless) spike generation, and can effectively reproduce a variety of spiking behaviors seen in vivo. We describe the maximum likelihood estimator for the model parameters, given only extracellular spike train responses (not intracellular voltage data). Specifically, we prove that the log-likelihood function is concave and thus has an essentially unique global maximum that can be found using gradient ascent techniques. We develop an efficient algorithm for computing the maximum likelihood solution, demonstrate the effectiveness of the resulting estimator with numerical simulations, and discuss a method of testing the model's validity using time-rescaling and density evolution techniques. Cited byMichael Vidne, Yashar Ahmadian, Jonathon Shlens, Jonathan W. Pillow, Jayant Kulkarni, Alan M. Litke, E. J. Chichilnisky, Eero Simoncelli, Liam Paninski. (2011) Modeling the impact of common noise inputs on the network activity of retinal ganglion cells. Journal of Computational NeuroscienceOnline publication date: 29-Dec-2011. CrossRef Yi Dong, Stefan Mihalas, Alexander Russell, Ralph Etienne-Cummings, Ernst Niebur. (2011) Estimating Parameters of Generalized Integrate-and-Fire Neurons from the Maximum Likelihood of Spike Trains. Neural Computation 23:11, 2833-2867 Online publication date: 1-Nov-2011. Abstract | Full Text | PDF (671 KB) | PDF Plus (424 KB) Emre Neftci, Elisabetta Chicca, Giacomo Indiveri, Rodney Douglas. (2011) A Systematic Method for Configuring VLSI Networks of Spiking Neurons. Neural Computation 23:10, 2457-2497 Online publication date: 1-Oct-2011. Abstract | Full Text | PDF (1192 KB) | PDF Plus (655 KB) Liang Meng, Mark A Kramer, Uri T Eden. (2011) A sequential Monte Carlo approach to estimate biophysical neural models from spikes. Journal of Neural Engineering 8:6, 065006 Online publication date: 1-Oct-2011. CrossRef Zhizhong Wang, Li Shi, Hong Wan, Xiaoke Niu. (2011) An information integration model of the primary visual cortex under grating stimulations. Biochemical and Biophysical Research CommunicationsOnline publication date: 1-Aug-2011. CrossRef Ude Lu, Dong Song, T W Berger. (2011) Nonlinear Dynamic Modeling of Synaptically Driven Single Hippocampal Neuron Intracellular Activity. IEEE Transactions on Biomedical Engineering 58:5, 1303-1313 Online publication date: 1-May-2011. CrossRef Patrick Jahn, Rune W. Berg, Jørn Hounsgaard, Susanne Ditlevsen. (2011) Motoneuron membrane potentials follow a time inhomogeneous jump diffusion process. Journal of Computational NeuroscienceOnline publication date: 9-Apr-2011. CrossRef Yi Dong, Stefan Mihalas, Ernst Niebur. 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